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NMRPipe: a Comprehensive Software System for Biomolecular NMR
Special Applications: NMR Drug Screening, Automation, and so on
Dipolar Couplings, Chemical Shifts, and Protein Structure
Miscellaneous

Frank's CV, Recent Slides, and Thesis

 

 

 

  Frank Delaglio, Ph.D.

  Software Science Consultant
  13840 Grey Colt Drive
  North Potomac MD 20878 USA


  Tel: 301 806-0867
  Fax: 301 309-8717
  E-mail: delaglio@nmrscience.com



NMRWish Built-In TCL Functions
modelXY: Non-linear least squares fitting of X/Y data pairs with monte carlo error analysis, according to a fitting function specified in TCL.


Non-Linear Least-Squares Optimization:
  modelXY
Optional flags:
Flag Argument Default Description
 -iseed seed 54321 Random Number Seed.
 -iter maxIt 500 Maximum Iterations.
 -maxf maxEv 500 Maximum Function Evaluations.
 -dig nDig 5 Number of Digits in Target.
 -tol relTol 1e-6 Relative Function Tolerance.
 -cf confid 0.90 Confidence Interval for Error.
 -verb Verbose Mode ON (Default).
 -noverb Verbose Mode Off.
 -silent Suppress Warning/Error Messages.
 -signal Allow interrupt via Control-C.
X/Y and Model Specification (Use -x/-y or -data)
 -x xList List of X Coords for Model.
 -y yList List of Y Coords for Model.
 -data specName Spectral Data for Y Coords of Model.
 -p pList List of Initial Values for Variables.
 -macro macName TCL Procedure Name for Model.
Optional User Flags:
 -a aList None List of Auxiliary Values.
 -pHi hiList Inf Upper Parameter Bound List.
 -pLo loList -Inf Lower Parameter Bound List.
 -noise nList 0.0 List of Noise Estimates for Y Coords.
 -yScale sFactor 1.0 Scale Factor for Y Coords.
 -gc guessCnt 1 Number of Monte Carlo Trials.
 -id fitID 0 An ID Number for this Analysis.
 -res No Proc returns residual, not function.
User-Defined Variables:
 -var vList Variable Name/Numerical Value Pairs.
 -str sList String Name/Text Value Pairs.
Spectral Variables (requires -data):
  quadSize X-Axis Complex Size (1 or 2).
  xSize X-Axis Size.
  ySize Y-Axis Size.
  zSize Z-Axis Size.
  aSize A-Axis Size.
  dimCount Dimension Count.
  fdata[FDATSIZE] Spectral Data Header Pointer.
General Variables:
  id (Input) ID Number for this Analysis.
  lsRes (Input) Current Least-Squares Residual.
  confid (Input) Confidence Interval, 0.0 to 1.0.
  reportFlag (Input) 1=Optimization is Finished.
  xList[xyCount] (Input) X-Coords for Model.
  dList[xyCount] (Input) Y-Coords from Original Data.
  qList[xyCount] (Input) Y-Coords from Monte Carlo Data.
  nList[xyCount] (Input) Corresponding Noise Values.
  eList[pCount] (Input) Monte Carlo Error Estimates.
  (Only When reportFlag = 1)
  pList[pCount] (Input) Current Model Parameters.
  (Optimal When reportFlag = 1)
  aList[aCount] (Input) Auxiliary values, if any.


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last updated: Apr 20, 2011 / big frank

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