Welcome: an Introduction to this Site
NMRPipe: a Comprehensive Software System for Biomolecular NMR
Special Applications: NMR Drug Screening, Automation, and so on
Dipolar Couplings, Chemical Shifts, and Protein Structure
Miscellaneous

Frank's CV, Recent Slides, and Thesis

 

  

 

  Frank Delaglio, Ph.D.

   Software Science Consultant
  13840 Grey Colt Drive
  North Potomac MD 20878 USA

  Tel: 301 806-0867
  Fax: 301 309-8717
  E-mail: delaglio@nmrscience.com



Scripts of the NMRPipe System
view2D.tcl: 2D Spectral Viewer with Overlay and Zoom.

With a Single Spectrum:
Flag Argument Default Description
 -in name1 Spectrum Name
With Two Spectra:
 -in1 inName1 Spectrum 1 Name
 -in2 inName2 Spectrum 2 Name
With a Spectral Series:
 -in inList Spectrum Name List
Contour Drawing:
 -plev pCount Positive Contour Count
 -nlev nCount Negative Contour Count
 -mult c Factor for Auto-Estimate of First Contour
 -factor f Factor for Contour Spacing
 -hi hi First Contour Height
 -hi1 hi1 First Contour Height, Spectrum 1
 -hi2 hi2 First Contour Height, Spectrum 2
General Arguments:
 -align Align by PPM (Approximate).
 -one Configure for One Spectrum
 -two Configure for Two Spectra (Default)
 -grid Use Grid Lines for Contours (Default).
 -nogrid No Grid Lines for Contours.
 -cont Contour Displays (Default)
 -pix Pixmap Displays
 -pts Zoom Region Coords in Points
 -ppm Zoom Region Coords in PPM
 -xSize xPix Default X-Axis Window Size
 -ySize yPix Default Y-Axis Window Size
 -export eName Special Procedure for Region Export
 -tab tabName Peak Table Name or List
 -tabView Enable Peak Table Viewing.
 -notabView Disable Peak Table Viewing (Default).
Color Arguments:
 -posColor1 posColor Positive Contour Drawing Color
 -negColor1 negColor Negative Contour Drawing Color
 -posColor2 posColor Positive Contour Drawing Color
 -negColor2 negColor Negative Contour Drawing Color
 -posColors posColors Positive Contour Drawing Color List
 -negColors negColors Negative Contour Drawing Color List
 -peakColor pkColor Peak Label Color
 -bgColor bgColor Contour Background Color
 -labelColor lColor Label Color
 -shadowColor sColor Label Shadow Color
 -zoomColor zColor Zoom Box Color
 -cursorColor cColor Cursor Color
 -gridColor gColor Grid Color
 -boxColor bColor Outline Box Color
 -proposeColor pColor Selected Region Box Color
 -acceptColor aColor Accepted Region Box Color

Under Construction

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last updated: Jan 22, 2009 / big frank

Contact site designer mimi at mdelaglio@hotmail.com