Frank Delaglio, Ph.D.

19804 Maycrest Way
Germantown MD 20876 USA

301 806-0867
delaglio@nmrscience.com



Scripts of the NMRPipe System
ss.tcl: Perform Secondary Structure and Hydrogen Bond Analysis on PDB File.

Flag Argument Default Description
 -pdb pdbName ref.pdb Input PDB Name.
 -dssp Include DSSP data from stdin.
 -verb Verbose Mode ON.
Notes:
  1. For info on DSSP: W. Kabsch and C.Sander, Biopolymers 22 (1983) 2577-2637
  2. To include DSSP results as a column of the output, strip ! comments from the DSSP result, for example:
  dssp ubiq.pdb | fgrep -v \! | ss.tcl -dssp -pdb ubiq.pdb -verb