Scripts of the NMRPipe System
scroll.tcl: On-Screen Strip Plot Manipulation for One or More 3D Spectra.

Contour Drawing:

`-hi`	`contHi`	`Auto ...`	First contour height.
`-plev`	`nPos`	`10 ...`	Number of Positive Contours.
`-nlev`	`nNeg`	`10 ...`	Number of Negative Contours.
`-mult`	`mult`	`2.0 ...`	Factor for Auto contour height.

Analysis Features:

`-pk`	`pkName`	`None ...`	3D Peak Table Data.
`-seq`	`seqName`	`None`	Residue Sequence Table.
`-cs`	`csName`	`None`	Reference Chemical Shift (CS) Table.
`-csVar`	`csVar`	`SHIFT`	Reference CS Table Variable Name.
`-pkXVar`	`xVar`	`Auto ...`	Peak Table X-Axis PPM Variable Name.
`-pkYVar`	`yVar`	`Auto ...`	Peak Table Y-Axis PPM Variable Name.
`-pkZVar`	`zVar`	`Auto ...`	Peak Table Z-Axis PPM Variable Name.
`-assVar`	`aVar`	`ASS ...`	Peak Table Assignment Variable Name.
`-xTol`	`xTol`	`0.03 ...`	X-Axis Comparison Tolerance, PPM.
`-yTol`	`yTol`	`0.15 ...`	Y-Axis Comparison Tolerance, PPM.
`-zTol`	`zTol`	`Auto ...`	Z-Axis Comparison Tolerance, PPM.
`-cmnd`			Show Command Panel Window.

Strip Axis Names:

`-xName`	`xName`	`Auto ...`	First Axis Name of Strip 2D Coord.
`-yName`	`yName`	`Auto ...`	Second Axis Name of Strip 2D Coord.
`-zName`	`zName`	`Auto ...`	Axis Name of Strip Dimension.

Strip Spectral Region Widths:

`-xw`	`xw`	`0.12ppm ...`	X-Axis +/- Width For view1.
`-yw`	`yw`	`0.80ppm ...`	Y-Axis +/- Width For view2.
`-zw`	`zw`	`1 ...`	Z-Axis +/- Width For Srip Projection.

Strip Region Limits, ppm, Hz, pts or %:

Coordinate Table Names:

`-xVar`	`xVar`	`Auto`	Variable name of first 2D PPM coord.
`-yVar`	`yVar`	`Auto`	Variable name of second 2D PPM coord.
`-idVar`	`idVar`	`INDEX`	2D Location Table ID Variable Name.
`-xOff`	`xOff`	`0.0 ...`	X Offset to Apply, PPM.
`-yOff`	`yOff`	`0.0 ...`	Y Offset to Apply, PPM.

Single/Pairwise Strip Plotting

`-view1`			Plot First (X-Axis) View For Each 2D Coord (Default).
`-view2`			Plot Second (Y-Axis) View For Each 2D Coord.
`-pair`			Plot Both Complementary Views (same as -view1 -view2).

Strip Labels:

`-lab`	`lVar`	`INDEX`	Variable name for Strip Label.
`-xGrid`			Draw X-Axis Grid Line (Default).
`-noxGrid`			No X-Axis Grid Line.
`-yGrid`			Draw Y-Axis Grid Lines (Default).
`-noyGrid`			No Y-Axis Grid Lines.

Colors:

`-fg`	`fgC`	`yellow ...`	Strip Foreground (Border) Color.
`-bg`	`bgC`	`black`	Strip Background Color.
`-colorF`	`fC`	`gray20 ...`	Folded Background Color (Or Keyword 'Blank').
`-colorA`	`aC`	`white`	Axis and Info Text Color.
`-colorH`	`aH`	`white`	Hilight Color for Active Items.
`-colorG`	`gC`	`dimGray`	Strip Grid Color.
`-colorW`	`wC`	`gray20`	Viewer Window Color.
`-colorL`	`lC`	`white ...`	Label Color.
`-colorP`	`pC`	`Multi ...`	Positive Contour Color.
`-colorN`	`nC`	`Multi ...`	Negative Contour Color.
`-colorC`	`cC`	`Default ...`	Cursor Colors.
`-colorQ`	`cQ`	`white ...`	Cursor Label Colors.

Strip Graphic Region Widths:

`-dx`	`xwPix`	`40`	Strip Width, Pixels.
`-qx1`	`xwPix`	`3`	Spacing Between Views, Pixels.
`-qx2`	`xwPix`	`6`	Spacing Between Spectra, Pixels.
`-qx3`	`xwPix`	`9`	Spacing Between Groups, Pixels.
`-ySize`	`ywPix`	`Auto`	Height of Graphics Area, Pixels.

Window Geometry:

`-g`	`geom`	`Auto`	Initial Window Geometry.
`-xAdj`	`xAdj`	`25`	X Adjustment for Window Size, Pixels.
`-yAdj`	`yAdj`	`70`	Y Adjustment for Window Size, Pixels.
`-cAdj`	`cAdj`	`220`	X Adjustment for Command Panel Window.
`-cx`	`cx`	`12`	X Character Size, Pixels.
`-cy`	`cy`	`15`	Y Character Size, Pixels.

Special Options:

`-history`	`hName`	`None`	File for Recording Strip Order Adjustments.
`-cursors`	`nC`	`0 ...`	Number of Horizontal Tracking Cursors.
`-shade`			Shade Backgrounds for Folded Data.
`-noshade`			No Shading of Backgrounds for Folded Data.
`-link`			Communicate to Other Scroll Applictions.