Scripts of the NMRPipe System
Draw a Simple Static 3D Cube Display of NMRPipe-Format 3D Data:
| Flag |
Argument |
Default |
Description |
-in |
inName |
ft/test%03d.ft3 |
3D Spectrum to Draw (Default can change). |
-plev |
plev |
1 |
Number of Positive Contours. |
-nlev |
nlev |
1 |
Number of Negative Contours. |
-hi |
hi |
Auto |
Contour Height (value or %.) |
-mult |
mult |
7.0 |
Factor for Auto Contour Height. |
Spectral Orientation for Drawing:
-xName |
xName |
H_AXIS |
Spectral Axis Name for Plot X-Axis. |
-yName |
yName |
V_AXIS |
Spectral Axis Name for Plot Y-Axis. |
-zName |
zName |
Z_AXIS |
Spectral Axis Name for Plot Z-Axis. |
-aName |
aName |
A_AXIS |
Spectral Axis Name, 4D Data Only. |
Spectral Limits (Use -x -y -z -a with Units % Hz ppm pts):
-ix1 |
ix1 |
0% |
Starting Coord of Range to Plot. |
-ixn |
ixn |
100% |
Ending Coord of Range to Plot. |
Drawing Sizes:
-cxSize |
cxSize |
400 |
Plot X-Axis Size, Pixels. |
-cySize |
cySize |
400 |
Plot Y-Axis Size, Pixels. |
-czSize |
czSize |
Auto |
Plot Final Z-Axis Offset, Pixels. |
Window Position on Screen:
-xOff |
xOff |
16 |
Window Horizontal Offset, Pixels. |
-yOff |
yOff |
32 |
Window Vertical Offset, Pixels. |
Spectrum Colors:
-colors |
cList |
red ... |
List of Colors for Spectral Drawing. |
-posColor |
pColor |
None |
Fixed Color for Positive Contours. |
-negColor |
nColor |
None |
Fixed Color for Negative Contours. |
Drawing Colors:
-fgColor |
fg |
white |
Forground Color (for Box Outlines). |
-bgColor |
bg |
black |
Background Color. |
Notes:
1. Contour height can be specified as a value, or by a
percentage ending with the '%' character, or by keywords
'Auto' or 'Full'.
2. Use '-colors multi' for spectral colors selected according
to intensity rather than Z-Axis position.
3. See file 'rgb.txt' in the NMRPipe 'nmrtxt' directory for valid
colors (/u/delaglio/nmrtxt/rgb.txt).
4. The graphic produced is a simple stack of fixed-sized 2D
plots with a linear offset.
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