Welcome: an Introduction to this Site
NMRPipe: a Comprehensive Software System for Biomolecular NMR
Special Applications: NMR Drug Screening, Automation, and so on
Dipolar Couplings, Chemical Shifts, and Protein Structure
Miscellaneous

Frank's CV, Recent Slides, and Thesis

 

 

 

  Frank Delaglio, Ph.D.

  Software Science Consultant
  13840 Grey Colt Drive
  North Potomac MD 20878 USA


  Tel: 301 806-0867
  Fax: 301 309-8717
  E-mail: delaglio@nmrscience.com



Scripts of the NMRPipe System
getTabInfo.tcl: Extract Descriptive Data from an NMRPipe format table.

Flag Argument Default Description
 -in tabName test.tab Input Table.
 -parm pList * Parameters to Extract.
List Text (REMARK, #, and DATA) Lines (Sets -parm None):
 -text tList None Text Lines to Extract, First is 0.
List DATA Lines (Sets -parm None):
 -key keyName * Key Names for DATA to Extract.
 -data dList None DATA Lines to Extract, First is 0.
List Entry (Row) Numbers in Sorted Table (Sets -parm None):
 -sort sVar None Variable Name for Sort.
 -abs Sort by Absolute Value.
 -up Sort in Increasing Order (Default).
 -down Sort in Decreasing Order.
Notes:
1. Parameter Names, Output for "-parm *" in this order:
    varCount    Number of Variables.
    entryCount  Number of Entries.
    textCount   Number of Text Lines.
    keyCount    Number of Different DATA Keywords.
    varNames    List of All Variable Names.
    keyNames    List of All DATA Keywords (Keys).
    keyLengths  List of Number of DATA Lines for Each Key.
    keyLength   List of Number of DATA Lines For Specified Keys.  Not output for -parm *
Examples:
 Find number of Variables in Table:
    getTabInfo.tcl -in csObs.tab -parm varCount
 Find number of DATA SEQUENCE lines:
    getTabInfo.tcl -in csObs.tab -key SEQUENCE -parm keyLength
 Get Contents of First DATA SEQUENCE line:
    getTabInfo.tcl -in csObs.tab -key SEQUENCE -data 0
 Get Contents of All DATA SEQUENCE lines:
    getTabInfo.tcl -in csObs.tab -key SEQUENCE -data "*"

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last updated: Jan 22, 2009 / big frank

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