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Frank
Delaglio, Ph.D.
Software Science Consultant
13840 Grey Colt Drive
North Potomac MD 20878 USA
Tel: 301 806-0867
Fax: 301 309-8717
E-mail: delaglio@nmrscience.com
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Scripts of the NMRPipe System
dcNoise.tcl: Estimate Effect of Noise on Dipolar Coupling Parameters.
| Flag |
Argument |
Default |
Description |
-in |
inName |
dObsA.tab |
Name of Input DC Table. |
-pdb |
pdbName |
ref.tab |
Name of Input PDB File. |
-trials |
nT |
50 |
Number of Trials. |
-iseed |
rand |
54321 |
Initial Random Seed (Zero for Auto). |
-DC |
dcArgs |
-svd |
Arguments for DC Calculation. |
Options for Randomizing PDB Coords (Angtroms):
-aSigma |
aStdDev |
0.1 |
Std Deviation of Coord Noise to Add. |
Options for Randomizing DC Values:
-dSigma |
dStdDev |
1.0 |
Std Deviation of Noise to Add. |
-var |
tabVar |
D |
Name of Table Variable to Adjust. |
-nvar |
nVar |
DD |
Table Variable with Std Dev of Noise, To Be Scaled by Sigma Above. |
Temporary Files:
-tmpTab |
tName |
tmp.tab |
Temporary Output Table. |
-tmpPDB |
pName |
tmp.pdb |
Temporary Output PDB File. |
Notes:
1. Use zero values for -dSigma or -aSigma to turn off randomization of DC values or PDB coords.
2. Use -DC arguments to restrain tensor parameters as desired. Try DC -help for a list of options.
3. Arguments for -DC must be the last ones on the command-line.
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last updated: Apr 20, 2011 / big frank
Contact site designer mimi at
mdelaglio@hotmail.com
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