Scripts of the NMRPipe System
autoFit.tcl: Automated ND-Dimensional Lineshape Fitting via nlinlS
| Flag |
Argument |
Default |
Description |
-specName |
specName |
test.ft2 |
Input Spectrum Name or Template. |
-simName |
simName |
sim.ft2 |
Output Simulation Spectrum. |
-difName |
difName |
dif.ft2 |
Output Difference Spectrum. |
-inTab |
inTabNamer |
test.tab |
Corresponding Input Peak Table. |
-auxTab |
auxTabName |
axt.tab |
Temporary Peak Table Name, If Needed. |
-outTab |
outTabName |
nlin.tab |
Output Peak Table. |
-noise |
sigma |
Auto |
RMS of Spectral Noise. |
-thresh |
thresh |
FromFile |
Detection Threshold (or FromFile or Auto). |
-sim1D |
|
|
Simulate Individual Components (1D Only). |
-time |
|
|
Use Time-Domain Model. |
-series |
|
|
Last Dimension is Pseudo-ND. |
-sleep |
sTime |
tSec |
Optional Sleep Time. |
-dir |
dirName |
. |
Working Directory. |
Lineshape Model Constraints (use X Y Z A):
-minXW |
minXW |
0.0 |
Min Full X-Width at Half Height, Pts. |
-maxXW |
maxXW |
Auto |
Max Full X-Width at Half Height, Pts. |
-regX |
regX |
Auto |
Peak Region X-Width, +/- Pts. |
-simX |
simX |
Auto |
Simulation Region X-Width, +/- Pts. |
-dX |
dX |
Auto |
Max Allowable X-Position Change, Pts. |
-modX |
modNameX |
GAUSS1D |
Model Function for X-Axis. |
|
|
