Programs of the NMRPipe System
readROI: Read a Region of Interest (ROI) from NMRPipe-Format Data
| Flag |
Argument |
Default |
Description |
-in |
inName |
None |
Input Name (Required). |
-roi |
roiID |
Current |
ID Number for ROI. |
-ndim |
finalDim |
2 |
Dimension Count for ROI. |
ROI Limits By Upper and Lower Bounds:
-x |
xName |
x1 xn |
ROI X-Axis Source and Limits. |
-y |
yName |
y1 yn |
ROI Y-Axis Source and Limits. |
-z |
zName |
z1 zn |
ROI Z-Axis Source and Limits. |
-a |
aName |
a1 an |
ROI A-Axis Source and Limits. |
ROI Limits By Center and +/- Width:
-dx |
xName x0 |
xW |
ROI X-Axis Source, Center, Width. |
-dy |
yName y0 |
yW |
ROI Y-Axis Source, Center, Width. |
-dz |
zName z0 |
zW |
ROI Z-Axis Source, Center, Width. |
-da |
aName a0 |
aW |
ROI A-Axis Source, Center, Width. |
Alignment Options:
-center |
axisList |
None |
Align Center of ROI. |
-left |
axisList |
None |
Align Left Edge of ROI. |
-right |
axisList |
None |
Align Right Edge of ROI. |
-edge |
axisList |
None |
Align Both Edges of ROI. |
Real vs Imaginary Data (X-Axis Only):
-real |
|
|
Use X-Axis Real Data (Default). |
-imag |
|
|
Use X-Axis Imaginary Data. |
Arguments for Report Generation:
-noverb |
|
|
Verbose Mode Off. |
-verb |
|
|
Verbose Mode On. |
Arguments to Write a Region of Interest.
-out |
|
|
outName Output Name for ROI result. |
-roi |
|
|
roiID ID of ROI, Default is Current ROI. |
-tty |
|
|
Suppress Check for I/O to TTY. |
-ov |
|
|
Allow overwrite of existing data. |
Strip Append Options (2D ROIs Only):
-init |
|
|
Initialize (delete) existing file. Use prior to appending strips. |
-append |
|
|
Append to the existing file. |
-offset |
|
0.0 |
Strip Axis Offset. |
-step |
|
0.0 |
Strip Axis Step Size. Use 0.0 for no axis adjustment. |
Arguments for Report Generation:
-noverb |
|
|
Verbose Mode Off. |
-verb |
|
|
Verbose Mode On. |
Special Stand-Alone Options:
-silent |
|
|
No Messages from Stand-Alone Command. |
-vec |
vNameList |
|
NMRWish vector functions (vSum vMin vMax ... Also: N NLIST) |
|
Under Construction
|
