Programs of the NMRPipe System
nmrPipe: Multdimension Spectral Processing Using Pipelines
nmrPipe -fn fnName [fnArgs] < inFile > outFile
Optional Flags:
| Flag |
Argument |
Default |
Description |
-in |
|
|
inName NMRPipe Format Input File Name. |
-out |
|
|
outName NMRPipe Format Output File Name. |
-ov |
|
|
Force Overwrite of Existing Data. |
-nofs |
|
|
Suppress File Size Check. |
-tty |
|
|
Suppress Check for I/O to TTY. |
-inPlace |
|
|
Allows in-place processing. |
Data Type Adjustment. Select Only One:
Deleting Imaginary Data:
-xi |
|
|
Delete Imaginaries, Complex Data Only. |
-dt |
|
|
Delete Imaginaries, Hypercomplex Only. |
-di |
|
|
Delete Current Imaginaries, Hypercomplex or Complex Data. |
Creating Empty Imaginary Data:
-ai |
|
|
Create Imaginaries, Real Data Only. |
-ad |
|
|
Create Hypercomplex Imaginaries, Complex Data Only. |
-ac |
|
|
Create Current Imaginaries, Real or Complex Data. |
Processing or Pass-Through of a Selected Region:
-select |
|
|
Y1 YN ... Specification of Region Limits. |
-outside |
|
|
Process vectors outside region. |
-inside |
|
|
Process vectors inside region (Default). |
Report Modes:
-verb |
vLevel |
2 |
|
-inc |
vIncrement |
16 |
|
-dbg |
dbgLevel |
0 |
|
-noSig |
|
|
Suppress Signal Catching. |
-X11 |
|
|
X11 is available for reports. |
Help Text:
-help |
|
|
Prints help text. Use the -fn fnName switch for more. |
-allHelp |
|
|
Prints help text for all functions (requires -help). |
Parallel Processing:
-client |
|
|
servListName |
-server |
|
|
portFileName |
-sID |
|
|
serverID |
-inSock |
|
|
inSocketPort |
-outSock |
|
|
outSocketPort |
-path |
pathName |
$cwd |
|
-smt |
sMaxTries |
-1 |
|
-sto |
suSecTO |
0 |
|
Header Control:
-inHdr |
|
|
inHdrName Use Name or !cmnd. |
-outHdr |
|
|
outHdrName Use Name, !cmnd, or 'none'. |
-inSwap |
|
|
Byte Swap of Input ON. |
-outSwap |
|
|
Byte Swap of Output ON. |
-fdata |
|
|
loc1 parm1... Parameter/Value List. |
I/O Control:
-buff |
ioBCount |
0 |
|
-ibuff |
inBCount |
0 |
|
-obuff |
oBuffCount |
0 |
|
-mt |
maxTries |
-1 |
|
-to |
uSecTO |
0 |
|
-noRd |
|
|
Suppress Reading of Input. |
-noWr |
|
|
Suppress Writing of Output. |
|
Under Construction
|
