Frank Delaglio, Ph.D.

19804 Maycrest Way
Germantown MD 20876 USA

301 806-0867
delaglio@nmrscience.com



Programs of the NMRPipe System
NMRDraw: Display and Analysis of NMRPipe-Format Spectral Data and Images

Flag Argument Default Description
 -in inName test.ft2 First Input Name.
 -dir dirName . Default Input Directory.
 -file fileExp "*" Directory List Filter.
 -name defName test.ft2 Default Input Name.
 -text textDir . Help Text Directory.
 -read no Auto-Read on Startup.
General Flags:
 -square Square Display Area.
 -track Default Loc Tracks Mouse.
 -focus Allow focus grab.
 -panel Use Stand-Alone Panel.
 -scroll Use Scrollable Panel.
 -verb Verbose Mode On.
 -noverb Verbose Mode Off (Default).
 -noxvwarn XView Warnings OFF (Default).
 -xvwarn XView Warnings ON.
 -dbg 0 Debug Message Level.
2D Display:
 -draw Auto-Draw with Read.
 -clear Auto-Clear when Drawing.
 -frzLevels Sometimes Freeze Contour Levels: Always Sometimes Never
 -frzZoom Sometimes Freeze 2D Zoom Region: Always Sometimes Never
 -autoScale Auto-Calc Contour Level.
 -grid Draw Grid Lines.
 -pix PixMap Display is Default.
 -useTitle Display Title from Header.Window Parameter Set-Up:
 -cellX xPix 0 Character Cell Width.
 -cellY yPix 0 Character Cell Height.
 -xAdj xPix 0 X Width Border Adjustment.
 -yAdj yPix 0 Y Width Border Adjustment.
 -dct msec 1500 Double-Click Time, msec.
 -repaint Force Manual Repaint Mode.
 -norepaint Avoid Manual Repaint Mode (Default).
 -frp 3 First Repaint Count.
 -depth dbits 8 Window Depth. Requires use of the -visual option.
 -type1 size Size for Regular Font: Small Medium Large
 -type2 size Size for Large Font: Small Medium Large
 -visual class Visual Class Keyword: PseudoColor StaticColor StaticGray GrayScale DirectColor TrueColor
  Default (PseudoColor)
Special Application Set-Up:
 -peak filtName Peak Analysis Setup.
 -image Image Display Setup.
 -dev Development Setup.
 -tk Use Tk-Style IPC.
1D Display:
 -lw1d 0 1D Drawing Width, Pixels.
 -vert Enable Vertical Plots.
 -zero Draw 1D Zero Level Line.
 -cursor Draw 1D Position Cursor.
 -relative Use Relative 1D Scaling.
 -compress Use 1D Display Compression.
Coordinates:
 -iz 1 Z-Plane Number.
 -ia 1 A-Plane Number.
Script Execution and External Commands:
 -sh shName csh Command interpreter name.
 -ext extName com File extension for scripts.
 -bin binPath NMRPipe Binary Path.
 -exec execCmnd Command for executing scripts.
 -sys Use System Call Via system().
 -nosys Use System Call Via | csh.
 -fork Use System Call Via fork().
 -save1D Suppress pipeline processing. Use explicit 1D save instead.
Processing:
 -func fnTab func.tab Function Table Name.
 -proc script proc1d.com 1D Processing Script.
 -zfht Temporary Zero Fill (ZF) with Hilbert Transform.
 -nozfht Suppress Temporary ZF with Hilbert Transform. (Default)
Contours:
 -mult contFactor 1.3 Contour Level Factor.
 -plev numLevels 10 Number of Positive Levels.
 -nlev numLevels 10 Number of Negative Levels.
 -hi firstHeight First Contour Height. (Old Option)
 -fhi firstHeight First Contour Height.
 -lhi lastHeight Last Contour Height.
Positive Level HSV Color Vector:
 -pcc numColors 12 Positive Color Count.
 -pHue1 hue 0.5 First Hue, 0.0 to 1.0.
 -pHue2 hue 0.7 Last Hue, 0.0 to 1.0.
 -pSat1 saturation 0.8 First Saturation, 0.0 to 1.0.
 -pSat2 saturation 1.0 Last Saturation, 0.0 t 1.0.
 -pVal1 value 1.0 First Value (Brightness) 0.0 to 1.0.
 -pVal2 value 1.0 Last Value (Brightness) 0.0 to 1.0.
Negative Level HSV Color Vector:
 -ncc numColors 12 Negative Color Count.
 -nHue1 hue 0.5 First Hue, 0.0 to 1.0.
 -nHue2 hue 0.7 Last Hue, 0.0 to 1.0.
 -nSat1 saturation 0.8 First Saturation, 0.0 to 1.0.
 -nSat2 saturation 1.0 Last Saturation, 0.0 to 1.0.
 -nVal1 value 1.0 First Value (Brightness), 0.0 to 1.0.
 -nVal2 value 1.0 Last Value (Brightness), 0.0 to 1.0.
Color Management:
 -XOR Always XOR Drawing Keyword: Always Sometimes Never
 -labMode Normal Label Drawing Keyword: Normal XOR Overlay
 -svri No Server Image Color Palette.
 -virt Never Virtual Colormap Keyword: Always Sometimes Never
 -virtOff 64 Virtual Color Index Offset.
 -static Use Static Color Table.
Program Colors:
 -colors clrList Below Color Name List.
 -color0 zeroClr lightGray Zero Line Color.
 -color1 1dClr yellow Active 1D Plot Color.
 -colorC cClr magenta Cursor Bar Color.
 -colorG gridClr dimGray Grid Line Color.
 -colorX xClr cyan X-Axis 1D Plot Color.
 -colorY yClr red Y-Axis 1D Plot Color.
 -colorZ zClr green Z-Axis 1D Plot Color.
 -colorA aClr orange A-Axis 1D Plot Color.
 -colorL lClr white Axis Label Color.
 -colorP1 p1Clr white Peak Label Color 1D.
 -colorP2 p2Clr white Peak Label Color 2D.
 -colorE eClr black Background Color.
Generic Window Arguments (See also, Output of: nmrDraw -help):
 -size x y Initial NMRDraw Window Width and Height, Pixels.
 -position x y Initial NMRDraw Window Positions, Pixels.
 -geometry geom Initial NMRDraw Window Geometry, X11 style.
Default Color Names:
 black        red          orange       yellow      
 green        blue         violet       cyan        
 magenta      lightGray    dimGray      gray30      
 gray20       white