Welcome: an Introduction to this Site
NMRPipe: a Comprehensive Software System for Biomolecular NMR
Special Applications: NMR Drug Screening, Automation, and so on
Dipolar Couplings, Chemical Shifts, and Protein Structure
Miscellaneous

Frank's CV, Recent Slides, and Thesis

 

  

 

  Frank Delaglio, Ph.D.

   Software Science Consultant
  13840 Grey Colt Drive
  North Potomac MD 20878 USA

  Tel: 301 806-0867
  Fax: 301 309-8717
  E-mail: delaglio@nmrscience.com



Programs of the NMRPipe System
nmr2Mask: Create a Binarized Labeled Mask from NMRPipe-format Data

Flag Argument Default Description
 -in inName test.ft2 Input Name.
 -out outName mask.dat Output Name.
 -reg ix1 ix3 iy1 iy3 0 0 0 0 Point Coords of Region to Analyze.
 -max maxThresh +1.0 Positive Threshold for Binarization.
 -min minThresh -MAX Negative Threshold for Binarization.
Special Mask and Labeling Options:
 -ed erosDilProg Controls Erosion/Dilation. Example: Erode/Erode/Dilate = -ed EED
 -label Count and Label Components.
 -sym Perform symmetry analysis.


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last updated: Jan 22, 2009 / big frank

Contact site designer mimi at mdelaglio@hotmail.com