Welcome: an Introduction to this Site
NMRPipe: a Comprehensive Software System for Biomolecular NMR
Special Applications: NMR Drug Screening, Automation, and so on
Dipolar Couplings, Chemical Shifts, and Protein Structure
Miscellaneous

Frank's CV, Recent Slides, and Thesis

 

 

 

  Frank Delaglio, Ph.D.

  Software Science Consultant
  13840 Grey Colt Drive
  North Potomac MD 20878 USA


  Tel: 301 806-0867
  Fax: 301 309-8717
  E-mail: delaglio@nmrscience.com



Programs of the NMRPipe System
byteAdjust: Adjust Length of Words in a Binary Data Stream

Flag Argument Default Description
 -in inName stdin Input name of data to adjust.
 -out outName stdout Output name for result.
 -bs bSize 4096 Buffer Size, Words.
 -iws wSize 2 Input Word Size, Bytes.
 -ows wSize 4 Output Word Size, Bytes.
 -bo bOffset 0 Byte Offset for Adjustment.
 -bp bPad 0 Byte Pad Between Buffers.
 -wc wCount 0 Total Words to Adjust. Use 0 for Auto-Mode.
 -is iScale 1 Integer Scale Factor. Assumes 4-byte Integer Output. (Use 0 for Auto).
 -last Pack Using Last Bytes of Word.
 -nofs Suppress File Size Check.
 -verb Verbose Mode On.
Special Float Conversions:
 -u2f Unsigned Char to Float.
 -c2f Char to Float.
 -s2f Short to Float.
 -t2f Unsigned Short to Float.
 -i2f Int to Float.
 -d2f Double to Float.
 -f2i Float to Int.
 -f2s Float to Short.
Byte-Swap Options:
 -swap Do Four-Byte Swap.
 -noswap Suppress Four-Byte Swap.
 -aswap Suppress Four-Byte Swap. (Meaning is System-dependant)
 -noaswap Do Four-Byte Swap. (Meaning is System-dependant)
Notes:
  1. In-place processing (same input and output) is allowed if options -in and -out are both used.
  2. Auto Byte-Count determination requires use of option -in inName.
  3. Use of a scale factor of -is 65536 to may be required to convert 2-byte integers to 4-byte data.

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last updated: Jan 22, 2009 / big frank

Contact site designer mimi at mdelaglio@hotmail.com